The Unipept Metagenomics Analysis Pipeline can analyse metagenomic samples and return a frequency table of the taxons it detected for each read. It is based on the Unipept Metaproteomics Analysis Pipeline. Both tools were developed at the Department of Applied Maths, Computer science and Statistics at Ghent University.
You will need [Rust] installed. The pipeline can then be installed by issuing the following commands:
sh
git clone 'git@github.ugent.be:unipept/unipept-metagenomics-scripts.git' umgap
cd umgap
cargo install --path .
This will install the umgap command to ~/.cargo/bin by default. Please
ensure this directory is in your $PATH.
Your installed version of the pipeline can be updated by issuing
sh
cargo install --force --path .
See umgap help or have a look at the short [metagenomics casestudy] at the
Unipept website.
Please use the RustFMT pre-push hook.
The UMGAP is released under the terms of the MIT License. See the LICENSE file for more info.