Parses fasta records based on list of either header names or regexes

Installation

Source

Download the source code and run

cargo install

Usage

seqsplitter -f path/to/sequence.fastq -l path/to/list.txt

Arguments:

| Parameter | Default | Description |
| :------------------------ |:-------------:| :-------------| | -f --fasta | - |The path to the FASTQ file to use | -l --list | - |List of ids to parse out | -r --regex | false |Interpret list as regex | -u --assume_unique | false |Assume list is unique and exit when all seqs in list are found | -v --version | - |Print version information