Library of RNA Bioinformatics Algorithms

This library provides basic algorithms in RNA bioinformatics. Available current algorithms are the gamma-centroid structure estimator, McCaskill's algorithm, and Durbin's algorithm. To model RNA secondary structure scoring, the Turner 2004 model and the CONTRAfold v2.02 model are available. I adopt the CONTRAlign v2.01 model to model RNA sequence alignment scoring. More descriptions of these two scoring models are here. The gamma-centroid structure estimator of this repository is compared to that of CentroidFold regarding secondary structure prediction accuracy:

| Gamma-centroid estimator performance of different models and different implementations |:-:|

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