CLI utilities for working with N5 files.
Written in Rust using the Rust N5 crate.
```console $ cargo install n5gest $ n5gest -h n5gest 0.3.0 Andrew Champion andrew.champion@gmail.com Utilities for N5 files.
USAGE:
n5gest [OPTIONS]
FLAGS: -h, --help Prints help information -V, --version Prints version information
OPTIONS:
-t, --threads
SUBCOMMANDS:
bench-read Benchmark reading an entire dataset.
crop-blocks Crop wrongly sized blocks to match dataset dimensions at the end of a given axis.
export Export a sequence of image files from a series of z-sections.
help Prints this message or the help of the given subcommand(s)
import Import a sequence of image files as a series of z-sections into a 3D N5 dataset.
ls List all datasets under an N5 root.
map-fold Run simple math expressions as folds over blocks. For example, to find the
maximum value in a positive dataset: map-fold example.n5 dataset 0 "max(acc, x)"
recompress Recompress an existing dataset into a new dataset with a given compression.
stat Retrieve metadata about the number of blocks that exists and their timestamps.
validate-blocks Report malformed blocks.
```
Additional subcommands are available when using the nightly feature flag:
sh
$ cargo +nightly install n5gest --features nightly
sh
cast Cast an existing dataset into a new dataset with a given data type.
Licensed under either of
at your option.
Unless you explicitly state otherwise, any contribution intentionally submitted for inclusion in the work by you, as defined in the Apache-2.0 license, shall be dual licensed as above, without any additional terms or conditions.