n5gest

CLI utilities for working with N5 files.

Written in Rust using the Rust N5 crate.

```console $ cargo build --release $ target/release/n5gest -h n5gest 0.1.0 Andrew Champion andrew.champion@gmail.com Utilities for N5 files.

USAGE: n5gest [OPTIONS]

FLAGS: -h, --help Prints help information -V, --version Prints version information

OPTIONS: -t, --threads Number of threads for parallel processing. By default, the number of CPU cores is used.

SUBCOMMANDS: bench-read Benchmark reading an entire dataset. crop-blocks Crop wrongly sized blocks to match dataset dimensions at the end of a given axis. help Prints this message or the help of the given subcommand(s) ls List all datasets under an N5 root. map-fold Run simple math expressions as folds over blocks. For example, to find the maximum value in a positive dataset: map-fold example.n5 dataset 0 "max(acc, x)" recompress Recompress an existing dataset into a new dataset with a given compression. validate-blocks Report malformed blocks. ```

License

Licensed under either of

• Apache License, Version 2.0, (LICENSE-APACHE or http://www.apache.org/licenses/LICENSE-2.0)
• MIT license (LICENSE-MIT or http://opensource.org/licenses/MIT)

at your option.

Contribution

Unless you explicitly state otherwise, any contribution intentionally submitted for inclusion in the work by you, as defined in the Apache-2.0 license, shall be dual licensed as above, without any additional terms or conditions.