fq-filter-reads

This is a simple program to filter a fastq file with a provided list of IDs.

Install

Installation from source:

git clone https://github.com/wckdouglas/fq-filter-reads.git cd fq-filter-reads cargo install --path .

Usage

``` $ fq-filter-reads -h Retaining fastq records with the given ID

Usage: fq-filter-reads [OPTIONS] --in-fastq --in-id-list

Options: --in-fastq input fastq file path --in-id-list input id list file, one per line --inverse only keep reads with ids NOT in the given id list i.e. removing any records with id in the id list -h, --help Print help -V, --version Print version ```

Example

Some test examples can be found under test_script.sh