entrez-rs

A Rust wrapper for the Entrez API

release:

master:

This library helps you access the Entrez API using idiomatic Rust. It also provides tools to parse the XML results from Entrez.

Installation

Add the following to your Cargo.toml: toml [dependencies] entrez-rs = "0.1.2"

Usage

```rust use entrezrs::eutils::{Eutils, ESearch, EFetch, DB}; use entrezrs::parser::esearch::{ESearchResult}; use entrezrs::parser::pubmed::{PubmedArticleSet}; use entrezrs::errors::Error;

fn main() -> Result<(), Error> { let xml = ESearch::new( DB::Pubmed, "eclampsia") .run()?;

    let parsed = ESearchResult::read(&xml);

    println!("{:#?}", &parsed?
                      .id_list
                      .ids);

    let pm_xml = EFetch::new(
          DB::Pubmed,
          vec!["33246200", "33243171"])
          .run()?;

    let pm_parsed = PubmedArticleSet::read(&pm_xml);

    println!("{}", pm_parsed?.articles);

    Ok(())

}

``` Will add a walkthrough and tutorial of the API as soon as it reaches beta level.

Inspired by Entrez Direct, Entrezpy and BioPython.