This project has been written in mainly Rust, a systems programming language.
You need to install the Rust components, which are rustc (the Rust compiler), cargo (the Rust package manager), and the Rust standard library.
Visit the Rust website to see more about the language.
You can install the components with one line as follows:
bash
$ curl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs | sh
The above installation is done by Rustup, so you can easily switch a compiler to use.
Also you need to install the Centroid RNA package to predict posterior pairing probabilities on global consensus RNA secondary structure.
You can install ConsAlifold as follows:
bash
$ cargo install consalifold
Check if the program has been installed properly as follows:
bash
$ consalifold # Its available command options will be displayed.
The figures shown in the paper of the program can be reproduced:
bash
$ cd src
$ ./run_all.py # Install python packages required to the reproduction. Saved figures will appear at the "../assets/images" directory.
Copyright (c) 2018 Heartsh
Licensed under the MIT license.