Rustbustools

Rust library to interact with the kallisto/bus format of scRNAseq data (see bustools). At this point, it's far from complete and correct, but rather a project to learn rust.

There's also a CLI mimicking bustools, see bustools_cli

Examples

For more examples, see the rust-docs.

Iterating a bus file

rust use bustools::io::{BusReader}; let bus = BusReader::new("/tmp/some.bus"); for record in bus { // record.CB, record.UMI ... }

Iterating a bus file by cell

```rust use bustools::io::BusReader; use bustools::iterators::CellGroupIterator; //need to bring that trait into scope

let breader = BusReader::new("/path/to/some.bus"); for (cb, vectorofrecords) in breader.groupbycb() { // Example: the number of records in that cell let nmolecules: usize = vectorofrecords.len(); } ```

TODO

• [ ] consolidate bus_multi and merger