Pairwise sequence alignment

A simple pairwise sequence alignment CLI.

Usage

``` A command line interface for easily aligning two sequences.

Usage: align [OPTIONS]

Arguments: First sequence Second sequence

Options: -g, --global Use global alignment, default -s, --semi-global Use semi-global alignment -l, --local Use local alignment -m, --mass Use mass alignment, interpreting the sequences as ProForma -n, --line-width The number of characters to show on a single line in the alignment [default: 50] -h, --help Print help -V, --version Print version ```

How to install

1. First install Rust.
2. Install the tool using cargo (part of Rust) cargo install align-cli
3. Use! align ANA AGGA -m

Example usage

AKTGLSHLGYGMDV AKEGLAFLGYGMDV