PDBget

CLI program to download files from rcsb.org

Installation

From sources

bash git clone https://gitlab.com/philippe_noel/pdbget.git cd pdbget cargo install --path pdbget --help

Usage

```bash Get Protein files 0.1.0 Philippe Noel Download Protein files on rcsb.org

USAGE: pdbget [OPTIONS] ...

FLAGS: -h, --help Prints help information -V, --version Prints version information

OPTIONS: -o

Output folder where to store files [default: ./] -t File type to download. 'PDB', 'CIF', 'FASTA' [default: PDB]

ARGS: ... PDB identifiers ``` with the -t option, you can specify the output file format. Possible format are: - 'pdb' : PDB format - 'pdbgz' : GZ compression of a PDB file - 'cif' : CIF format - 'cifgz' : GZ compression of a CIF file - 'fasta' : FASTA sequence(s) of the protein - 'xml' : GZ compression of an XML file (uncompress XML are not provide on rcsb.org)